Package mdp :: Package nodes :: Class GridSearchCVScikitsLearnNode
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Class GridSearchCVScikitsLearnNode



Exhaustive search over specified parameter values for an estimator.

This node has been automatically generated by wrapping the ``sklearn.grid_search.GridSearchCV`` class
from the ``sklearn`` library.  The wrapped instance can be accessed
through the ``scikits_alg`` attribute.

Important members are fit, predict.

GridSearchCV implements a "fit" and a "score" method.
It also implements "predict", "predict_proba", "decision_function",
"transform" and "inverse_transform" if they are implemented in the
estimator used.

The parameters of the estimator used to apply these methods are optimized
by cross-validated grid-search over a parameter grid.

Read more in the :ref:`User Guide <grid_search>`.

**Parameters**

estimator : estimator object.
    A object of that type is instantiated for each grid point.
    This is assumed to implement the scikit-learn estimator interface.
    Either estimator needs to provide a ``score`` function,
    or ``scoring`` must be passed.

param_grid : dict or list of dictionaries
    Dictionary with parameters names (string) as keys and lists of
    parameter settings to try as values, or a list of such
    dictionaries, in which case the grids spanned by each dictionary
    in the list are explored. This enables searching over any sequence
    of parameter settings.

scoring : string, callable or None, default=None
    A string (see model evaluation documentation) or
    a scorer callable object / function with signature
    ``scorer(estimator, X, y)``.
    If ``None``, the ``score`` method of the estimator is used.

fit_params : dict, optional
    Parameters to pass to the fit method.

n_jobs : int, default=1
    Number of jobs to run in parallel.

    .. versionchanged:: 0.17
       Upgraded to joblib 0.9.3.

pre_dispatch : int, or string, optional
    Controls the number of jobs that get dispatched during parallel
    execution. Reducing this number can be useful to avoid an
    explosion of memory consumption when more jobs get dispatched
    than CPUs can process. This parameter can be:


        - None, in which case all the jobs are immediately
          created and spawned. Use this for lightweight and
          fast-running jobs, to avoid delays due to on-demand
          spawning of the jobs

        - An int, giving the exact number of total jobs that are
          spawned

        - A string, giving an expression as a function of n_jobs,
          as in '2*n_jobs'

iid : boolean, default=True
    If True, the data is assumed to be identically distributed across
    the folds, and the loss minimized is the total loss per sample,
    and not the mean loss across the folds.

cv : int, cross-validation generator or an iterable, optional
    Determines the cross-validation splitting strategy.
    Possible inputs for cv are:


    - None, to use the default 3-fold cross-validation,
    - integer, to specify the number of folds.
    - An object to be used as a cross-validation generator.
    - An iterable yielding train/test splits.

    For integer/None inputs, if ``y`` is binary or multiclass,
    :class:`StratifiedKFold` used. If the estimator is a classifier
    or if ``y`` is neither binary nor multiclass, :class:`KFold` is used.

    Refer :ref:`User Guide <cross_validation>` for the various
    cross-validation strategies that can be used here.

refit : boolean, default=True
    Refit the best estimator with the entire dataset.
    If "False", it is impossible to make predictions using
    this GridSearchCV instance after fitting.

verbose : integer
    Controls the verbosity: the higher, the more messages.

error_score : 'raise' (default) or numeric
    Value to assign to the score if an error occurs in estimator fitting.
    If set to 'raise', the error is raised. If a numeric value is given,
    FitFailedWarning is raised. This parameter does not affect the refit
    step, which will always raise the error.


**Examples**

>>> from sklearn import svm, grid_search, datasets
>>> iris = datasets.load_iris()
>>> parameters = {'kernel':('linear', 'rbf'), 'C':[1, 10]}
>>> svr = svm.SVC()
>>> clf = grid_search.GridSearchCV(svr, parameters)
>>> clf.fit(iris.data, iris.target)
...                             # doctest: +NORMALIZE_WHITESPACE +ELLIPSIS
GridSearchCV(cv=None, error_score=...,
       estimator=SVC(C=1.0, cache_size=..., class_weight=..., coef0=...,
                     decision_function_shape=None, degree=..., gamma=...,
                     kernel='rbf', max_iter=-1, probability=False,
                     random_state=None, shrinking=True, tol=...,
                     verbose=False),
       fit_params={}, iid=..., n_jobs=1,
       param_grid=..., pre_dispatch=..., refit=...,
       scoring=..., verbose=...)


**Attributes**

``grid_scores_`` : list of named tuples
    Contains scores for all parameter combinations in param_grid.
    Each entry corresponds to one parameter setting.
    Each named tuple has the attributes:


        * ``parameters``, a dict of parameter settings
        * ``mean_validation_score``, the mean score over the
          cross-validation folds
        * ``cv_validation_scores``, the list of scores for each fold

``best_estimator_`` : estimator
    Estimator that was chosen by the search, i.e. estimator
    which gave highest score (or smallest loss if specified)
    on the left out data. Not available if refit=False.

``best_score_`` : float
    Score of best_estimator on the left out data.

``best_params_`` : dict
    Parameter setting that gave the best results on the hold out data.

``scorer_`` : function
    Scorer function used on the held out data to choose the best
    parameters for the model.

**Notes**

The parameters selected are those that maximize the score of the left out
data, unless an explicit score is passed in which case it is used instead.

If `n_jobs` was set to a value higher than one, the data is copied for each
point in the grid (and not `n_jobs` times). This is done for efficiency
reasons if individual jobs take very little time, but may raise errors if
the dataset is large and not enough memory is available.  A workaround in
this case is to set `pre_dispatch`. Then, the memory is copied only
`pre_dispatch` many times. A reasonable value for `pre_dispatch` is `2 *
n_jobs`.

See Also

:class:`ParameterGrid`:

    - generates all the combinations of a an hyperparameter grid.


:func:`sklearn.cross_validation.train_test_split`:

    - utility function to split the data into a development set usable
    - for fitting a GridSearchCV instance and an evaluation set for
    - its final evaluation.


:func:`sklearn.metrics.make_scorer`:

    - Make a scorer from a performance metric or loss function.

Instance Methods [hide private]
 
__init__(self, input_dim=None, output_dim=None, dtype=None, **kwargs)
Exhaustive search over specified parameter values for an estimator.
 
_execute(self, x)
 
_get_supported_dtypes(self)
Return the list of dtypes supported by this node. The types can be specified in any format allowed by numpy.dtype.
 
_stop_training(self, **kwargs)
Concatenate the collected data in a single array.
 
execute(self, x)
Process the data contained in x.
 
stop_training(self, **kwargs)
Run fit with all sets of parameters.

Inherited from unreachable.newobject: __long__, __native__, __nonzero__, __unicode__, next

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __setattr__, __sizeof__, __subclasshook__

    Inherited from Cumulator
 
_train(self, *args)
Collect all input data in a list.
 
train(self, *args)
Collect all input data in a list.
    Inherited from Node
 
__add__(self, other)
 
__call__(self, x, *args, **kwargs)
Calling an instance of Node is equivalent to calling its execute method.
 
__repr__(self)
repr(x)
 
__str__(self)
str(x)
 
_check_input(self, x)
 
_check_output(self, y)
 
_check_train_args(self, x, *args, **kwargs)
 
_get_train_seq(self)
 
_if_training_stop_training(self)
 
_inverse(self, x)
 
_pre_execution_checks(self, x)
This method contains all pre-execution checks.
 
_pre_inversion_checks(self, y)
This method contains all pre-inversion checks.
 
_refcast(self, x)
Helper function to cast arrays to the internal dtype.
 
_set_dtype(self, t)
 
_set_input_dim(self, n)
 
_set_output_dim(self, n)
 
copy(self, protocol=None)
Return a deep copy of the node.
 
get_current_train_phase(self)
Return the index of the current training phase.
 
get_dtype(self)
Return dtype.
 
get_input_dim(self)
Return input dimensions.
 
get_output_dim(self)
Return output dimensions.
 
get_remaining_train_phase(self)
Return the number of training phases still to accomplish.
 
get_supported_dtypes(self)
Return dtypes supported by the node as a list of dtype objects.
 
has_multiple_training_phases(self)
Return True if the node has multiple training phases.
 
inverse(self, y, *args, **kwargs)
Invert y.
 
is_training(self)
Return True if the node is in the training phase, False otherwise.
 
save(self, filename, protocol=-1)
Save a pickled serialization of the node to filename. If filename is None, return a string.
 
set_dtype(self, t)
Set internal structures' dtype.
 
set_input_dim(self, n)
Set input dimensions.
 
set_output_dim(self, n)
Set output dimensions.
Static Methods [hide private]
 
is_invertible()
Return True if the node can be inverted, False otherwise.
 
is_trainable()
Return True if the node can be trained, False otherwise.
Properties [hide private]

Inherited from object: __class__

    Inherited from Node
  _train_seq
List of tuples:
  dtype
dtype
  input_dim
Input dimensions
  output_dim
Output dimensions
  supported_dtypes
Supported dtypes
Method Details [hide private]

__init__(self, input_dim=None, output_dim=None, dtype=None, **kwargs)
(Constructor)

 

Exhaustive search over specified parameter values for an estimator.

This node has been automatically generated by wrapping the ``sklearn.grid_search.GridSearchCV`` class
from the ``sklearn`` library.  The wrapped instance can be accessed
through the ``scikits_alg`` attribute.

Important members are fit, predict.

GridSearchCV implements a "fit" and a "score" method.
It also implements "predict", "predict_proba", "decision_function",
"transform" and "inverse_transform" if they are implemented in the
estimator used.

The parameters of the estimator used to apply these methods are optimized
by cross-validated grid-search over a parameter grid.

Read more in the :ref:`User Guide <grid_search>`.

**Parameters**

estimator : estimator object.
    A object of that type is instantiated for each grid point.
    This is assumed to implement the scikit-learn estimator interface.
    Either estimator needs to provide a ``score`` function,
    or ``scoring`` must be passed.

param_grid : dict or list of dictionaries
    Dictionary with parameters names (string) as keys and lists of
    parameter settings to try as values, or a list of such
    dictionaries, in which case the grids spanned by each dictionary
    in the list are explored. This enables searching over any sequence
    of parameter settings.

scoring : string, callable or None, default=None
    A string (see model evaluation documentation) or
    a scorer callable object / function with signature
    ``scorer(estimator, X, y)``.
    If ``None``, the ``score`` method of the estimator is used.

fit_params : dict, optional
    Parameters to pass to the fit method.

n_jobs : int, default=1
    Number of jobs to run in parallel.

    .. versionchanged:: 0.17
       Upgraded to joblib 0.9.3.

pre_dispatch : int, or string, optional
    Controls the number of jobs that get dispatched during parallel
    execution. Reducing this number can be useful to avoid an
    explosion of memory consumption when more jobs get dispatched
    than CPUs can process. This parameter can be:


        - None, in which case all the jobs are immediately
          created and spawned. Use this for lightweight and
          fast-running jobs, to avoid delays due to on-demand
          spawning of the jobs

        - An int, giving the exact number of total jobs that are
          spawned

        - A string, giving an expression as a function of n_jobs,
          as in '2*n_jobs'

iid : boolean, default=True
    If True, the data is assumed to be identically distributed across
    the folds, and the loss minimized is the total loss per sample,
    and not the mean loss across the folds.

cv : int, cross-validation generator or an iterable, optional
    Determines the cross-validation splitting strategy.
    Possible inputs for cv are:


    - None, to use the default 3-fold cross-validation,
    - integer, to specify the number of folds.
    - An object to be used as a cross-validation generator.
    - An iterable yielding train/test splits.

    For integer/None inputs, if ``y`` is binary or multiclass,
    :class:`StratifiedKFold` used. If the estimator is a classifier
    or if ``y`` is neither binary nor multiclass, :class:`KFold` is used.

    Refer :ref:`User Guide <cross_validation>` for the various
    cross-validation strategies that can be used here.

refit : boolean, default=True
    Refit the best estimator with the entire dataset.
    If "False", it is impossible to make predictions using
    this GridSearchCV instance after fitting.

verbose : integer
    Controls the verbosity: the higher, the more messages.

error_score : 'raise' (default) or numeric
    Value to assign to the score if an error occurs in estimator fitting.
    If set to 'raise', the error is raised. If a numeric value is given,
    FitFailedWarning is raised. This parameter does not affect the refit
    step, which will always raise the error.


**Examples**

>>> from sklearn import svm, grid_search, datasets
>>> iris = datasets.load_iris()
>>> parameters = {'kernel':('linear', 'rbf'), 'C':[1, 10]}
>>> svr = svm.SVC()
>>> clf = grid_search.GridSearchCV(svr, parameters)
>>> clf.fit(iris.data, iris.target)
...                             # doctest: +NORMALIZE_WHITESPACE +ELLIPSIS
GridSearchCV(cv=None, error_score=...,
       estimator=SVC(C=1.0, cache_size=..., class_weight=..., coef0=...,
                     decision_function_shape=None, degree=..., gamma=...,
                     kernel='rbf', max_iter=-1, probability=False,
                     random_state=None, shrinking=True, tol=...,
                     verbose=False),
       fit_params={}, iid=..., n_jobs=1,
       param_grid=..., pre_dispatch=..., refit=...,
       scoring=..., verbose=...)


**Attributes**

``grid_scores_`` : list of named tuples
    Contains scores for all parameter combinations in param_grid.
    Each entry corresponds to one parameter setting.
    Each named tuple has the attributes:


        * ``parameters``, a dict of parameter settings
        * ``mean_validation_score``, the mean score over the
          cross-validation folds
        * ``cv_validation_scores``, the list of scores for each fold

``best_estimator_`` : estimator
    Estimator that was chosen by the search, i.e. estimator
    which gave highest score (or smallest loss if specified)
    on the left out data. Not available if refit=False.

``best_score_`` : float
    Score of best_estimator on the left out data.

``best_params_`` : dict
    Parameter setting that gave the best results on the hold out data.

``scorer_`` : function
    Scorer function used on the held out data to choose the best
    parameters for the model.

**Notes**

The parameters selected are those that maximize the score of the left out
data, unless an explicit score is passed in which case it is used instead.

If `n_jobs` was set to a value higher than one, the data is copied for each
point in the grid (and not `n_jobs` times). This is done for efficiency
reasons if individual jobs take very little time, but may raise errors if
the dataset is large and not enough memory is available.  A workaround in
this case is to set `pre_dispatch`. Then, the memory is copied only
`pre_dispatch` many times. A reasonable value for `pre_dispatch` is `2 *
n_jobs`.

See Also

:class:`ParameterGrid`:

    - generates all the combinations of a an hyperparameter grid.


:func:`sklearn.cross_validation.train_test_split`:

    - utility function to split the data into a development set usable
    - for fitting a GridSearchCV instance and an evaluation set for
    - its final evaluation.


:func:`sklearn.metrics.make_scorer`:

    - Make a scorer from a performance metric or loss function.

Overrides: object.__init__

_execute(self, x)

 
Overrides: Node._execute

_get_supported_dtypes(self)

 
Return the list of dtypes supported by this node. The types can be specified in any format allowed by numpy.dtype.
Overrides: Node._get_supported_dtypes

_stop_training(self, **kwargs)

 
Concatenate the collected data in a single array.
Overrides: Node._stop_training

execute(self, x)

 

Process the data contained in x.

If the object is still in the training phase, the function stop_training will be called. x is a matrix having different variables on different columns and observations on the rows.

By default, subclasses should overwrite _execute to implement their execution phase. The docstring of the _execute method overwrites this docstring.

Overrides: Node.execute

is_invertible()
Static Method

 
Return True if the node can be inverted, False otherwise.
Overrides: Node.is_invertible
(inherited documentation)

is_trainable()
Static Method

 
Return True if the node can be trained, False otherwise.
Overrides: Node.is_trainable

stop_training(self, **kwargs)

 

Run fit with all sets of parameters.

This node has been automatically generated by wrapping the sklearn.grid_search.GridSearchCV class from the sklearn library. The wrapped instance can be accessed through the scikits_alg attribute.

Parameters

X : array-like, shape = [n_samples, n_features]
Training vector, where n_samples is the number of samples and n_features is the number of features.
y : array-like, shape = [n_samples] or [n_samples, n_output], optional
Target relative to X for classification or regression; None for unsupervised learning.
Overrides: Node.stop_training