Package mdp :: Package nodes :: Class GaussianNBScikitsLearnNode

Class GaussianNBScikitsLearnNode


Gaussian Naive Bayes (GaussianNB)

This node has been automatically generated by wrapping the ``sklearn.naive_bayes.GaussianNB`` class
from the ``sklearn`` library.  The wrapped instance can be accessed
through the ``scikits_alg`` attribute.

Can perform online updates to model parameters via `partial_fit` method.
For details on algorithm used to update feature means and variance online,
see Stanford CS tech report STAN-CS-79-773 by Chan, Golub, and LeVeque:


    http://i.stanford.edu/pub/cstr/reports/cs/tr/79/773/CS-TR-79-773.pdf

Read more in the :ref:`User Guide <gaussian_naive_bayes>`.

**Attributes**

``class_prior_`` : array, shape (n_classes,)
    probability of each class.

``class_count_`` : array, shape (n_classes,)
    number of training samples observed in each class.

``theta_`` : array, shape (n_classes, n_features)
    mean of each feature per class

``sigma_`` : array, shape (n_classes, n_features)
    variance of each feature per class

**Examples**

>>> import numpy as np
>>> X = np.array([[-1, -1], [-2, -1], [-3, -2], [1, 1], [2, 1], [3, 2]])
>>> Y = np.array([1, 1, 1, 2, 2, 2])
>>> from sklearn.naive_bayes import GaussianNB
>>> clf = GaussianNB()
>>> clf.fit(X, Y)
GaussianNB()
>>> print(clf.predict([[-0.8, -1]]))
[1]
>>> clf_pf = GaussianNB()
>>> clf_pf.partial_fit(X, Y, np.unique(Y))
GaussianNB()
>>> print(clf_pf.predict([[-0.8, -1]]))
[1]

Instance Methods

[hide private]

__init__(self, input_dim=None, output_dim=None, dtype=None, **kwargs)
If the input dimension and the output dimension are unspecified, they will be set when the train or execute method is called for the first time. If dtype is unspecified, it will be inherited from the data it receives at the first call of train or execute.

_get_supported_dtypes(self)
Return the list of dtypes supported by this node. The types can be specified in any format allowed by numpy.dtype.

_label(self, x)

_stop_training(self, **kwargs)
Transform the data and labels lists to array objects and reshape them.

label(self, x)
Perform classification on an array of test vectors X.

stop_training(self, **kwargs)
Fit Gaussian Naive Bayes according to X, y

Inherited from PreserveDimNode (private): _set_input_dim, _set_output_dim

Inherited from unreachable.newobject: __long__, __native__, __nonzero__, __unicode__, next

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __setattr__, __sizeof__, __subclasshook__

Inherited from ClassifierCumulator

_check_train_args(self, x, labels)

_train(self, x, labels)
Cumulate all input data in a one dimensional list.

train(self, x, labels)
Cumulate all input data in a one dimensional list.

Inherited from ClassifierNode

_execute(self, x)

_prob(self, x, *args, **kargs)

execute(self, x)
Process the data contained in x.

prob(self, x, *args, **kwargs)
Predict probability for each possible outcome.

rank(self, x, threshold=None)
Returns ordered list with all labels ordered according to prob(x) (e.g., [[3 1 2], [2 1 3], ...]).

Inherited from Node

__add__(self, other)

__call__(self, x, *args, **kwargs)
Calling an instance of Node is equivalent to calling its execute method.

__repr__(self)
repr(x)

__str__(self)
str(x)

_check_input(self, x)

_check_output(self, y)

_get_train_seq(self)

_if_training_stop_training(self)

_inverse(self, x)

_pre_execution_checks(self, x)
This method contains all pre-execution checks.

_pre_inversion_checks(self, y)
This method contains all pre-inversion checks.

_refcast(self, x)
Helper function to cast arrays to the internal dtype.

_set_dtype(self, t)

copy(self, protocol=None)
Return a deep copy of the node.

get_current_train_phase(self)
Return the index of the current training phase.

get_dtype(self)
Return dtype.

get_input_dim(self)
Return input dimensions.

get_output_dim(self)
Return output dimensions.

get_remaining_train_phase(self)
Return the number of training phases still to accomplish.

get_supported_dtypes(self)
Return dtypes supported by the node as a list of dtype objects.

has_multiple_training_phases(self)
Return True if the node has multiple training phases.

inverse(self, y, *args, **kwargs)
Invert y.

is_training(self)
Return True if the node is in the training phase, False otherwise.

save(self, filename, protocol=-1)
Save a pickled serialization of the node to filename. If filename is None, return a string.

set_dtype(self, t)
Set internal structures' dtype.

set_input_dim(self, n)
Set input dimensions.

set_output_dim(self, n)
Set output dimensions.

Static Methods

[hide private]

is_invertible()
Return True if the node can be inverted, False otherwise.

is_trainable()
Return True if the node can be trained, False otherwise.

Properties

[hide private]

Inherited from object: __class__

Inherited from Node

_train_seq
List of tuples:

dtype
dtype

input_dim
Input dimensions

output_dim
Output dimensions

supported_dtypes
Supported dtypes

Method Details

[hide private]

init(self, input_dim=None, output_dim=None, dtype=None, **kwargs)
(Constructor)

If the input dimension and the output dimension are unspecified, they will be set when the train or execute method is called for the first time. If dtype is unspecified, it will be inherited from the data it receives at the first call of train or execute.

Every subclass must take care of up- or down-casting the internal structures to match this argument (use _refcast private method when possible).

Overrides: object.__init__: (inherited documentation)

_get_supported_dtypes(self)

Return the list of dtypes supported by this node. The types can be specified in any format allowed by numpy.dtype.

Overrides: Node._get_supported_dtypes

_label(self, x)

Overrides: ClassifierNode._label

_stop_training(self, **kwargs)

Transform the data and labels lists to array objects and reshape them.

Overrides: Node._stop_training

is_invertible()
Static Method

Return True if the node can be inverted, False otherwise.

Overrides: Node.is_invertible: (inherited documentation)

is_trainable()
Static Method

Return True if the node can be trained, False otherwise.

Overrides: Node.is_trainable

label(self, x)

Perform classification on an array of test vectors X.

This node has been automatically generated by wrapping the sklearn.naive_bayes.GaussianNB class from the sklearn library. The wrapped instance can be accessed through the scikits_alg attribute.

Parameters

X : array-like, shape = [n_samples, n_features]

Returns

C : array, shape = [n_samples]: Predicted target values for X

Overrides: ClassifierNode.label

stop_training(self, **kwargs)


Fit Gaussian Naive Bayes according to X, y

This node has been automatically generated by wrapping the ``sklearn.naive_bayes.GaussianNB`` class
from the ``sklearn`` library.  The wrapped instance can be accessed
through the ``scikits_alg`` attribute.

**Parameters**

X : array-like, shape (n_samples, n_features)
    Training vectors, where n_samples is the number of samples
    and n_features is the number of features.

y : array-like, shape (n_samples,)
    Target values.

sample_weight : array-like, shape (n_samples,), optional
    Weights applied to individual samples (1. for unweighted).

    .. versionadded:: 0.17
       Gaussian Naive Bayes supports fitting with *sample_weight*.

Returns

self : object
    Returns self.

Overrides: Node.stop_training

Class GaussianNBScikitsLearnNode

__init__(self, input_dim=None, output_dim=None, dtype=None, **kwargs) (Constructor)

_get_supported_dtypes(self)

_label(self, x)

_stop_training(self, **kwargs)

is_invertible() Static Method

is_trainable() Static Method

label(self, x)

stop_training(self, **kwargs)

init(self, input_dim=None, output_dim=None, dtype=None, **kwargs)
(Constructor)

is_invertible()
Static Method

is_trainable()
Static Method